PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG573900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 346aa    MW: 39356 Da    PI: 6.7369
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG573900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.23.7e-2583177190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                          +fY +YA+++GFsvr+ ++k   +ng + +++f C+++g+r++++++      ++k+ +++ etr+gC+a +  k++++gk+++  l+++
  Pavir.5NG573900.1.p  83 EFYMNYAHDIGFSVRIGQQKLD-DNGVVQWKRFLCTRQGYRKQQTTApvdptkKNKKAQNTRETRCGCEAYMYFKRNSEGKYKIGALHED 171
                          6****************98876.9999****************9999****988899999****************************** PP

                 FAR1  85 HnHela 90 
                          HnHel+
  Pavir.5NG573900.1.p 172 HNHELV 177
                          ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-2283177IPR004330FAR1 DNA binding domain
PfamPF105518.0E-14297345IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDEVERVESP AEGGINGIQG TSFSSSNVTD TITTGMDERI ELPCDNLDDV EHSDKDGGFR  60
TPTKKASVPK VGMLFDDVES VQEFYMNYAH DIGFSVRIGQ QKLDDNGVVQ WKRFLCTRQG  120
YRKQQTTAPV DPTKKNKKAQ NTRETRCGCE AYMYFKRNSE GKYKIGALHE DHNHELVTPS  180
KQHLLRSKRF VSEKAKTTLF NCHKASIGTS QAYILLHVGA GGFEYVGCTK KDLQNYYSDF  240
RNKIKDADAQ MFIDQFGRLK EVDPGFFFEY EVNDGRLVRV FWADTTSRKN YSHFGDVVSF  300
DSTYSTNQYD MKFAPFTGVN HHMQSVSFGA AFIADEKIES YVWLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG573900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815327.11e-164protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T7E5211e-151A0A2T7E521_9POAL; Uncharacterized protein
STRINGSb01g026910.11e-119(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-54FAR1-related sequence 5