PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG580800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 187aa    MW: 19340.3 Da    PI: 6.2264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG580800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00115375123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+k+F++   L  H  +H
  Pavir.5NG580800.1.p 53 FECKTCSKRFPSFQALGGHRTSH 75
                         89**********99998888777 PP
2zf-C2H211.90.00067105127123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  Cg  Fs    L  H+r+H
  Pavir.5NG580800.1.p 105 HECAVCGLEFSMGQALGGHMRRH 127
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.14E-65077No hitNo description
PfamPF139124.1E-125275IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4295380IPR007087Zinc finger, C2H2
SMARTSM003550.185375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-4103132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.18E-6103133No hitNo description
PfamPF139122.2E-11104129IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.217105132IPR007087Zinc finger, C2H2
SMARTSM003550.89105127IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MTLTRHEAEE SKEMEGLRAH AVALLSLSSS PESAAAAAAS AASRRAMAAE GVFECKTCSK  60
RFPSFQALGG HRTSHTRLQA RMLSDAAAGA GGGAAAAERD RARVHECAVC GLEFSMGQAL  120
GGHMRRHRGE APQAAHDDGA AQPDQAMPDL NFPPLEDGTG GGGDGGQDQQ RSTDHNSEPQ  180
LLNLLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG580800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-78HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817787.18e-97zinc finger protein ZAT12-like
TrEMBLA0A2S3HQN82e-95A0A2S3HQN8_9POAL; Uncharacterized protein
TrEMBLA0A2T7DEP52e-95A0A2T7DEP5_9POAL; Uncharacterized protein
STRINGPavir.J14338.1.p2e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-21C2H2 family protein