PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG586200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 185aa    MW: 19020.3 Da    PI: 7.254
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG586200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like422e-1398128132
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPkti 32 
                          k+r++WtpeLH+rFveav++L G + A+Pk+i
  Pavir.5NG586200.1.p  98 KARMVWTPELHHRFVEAVAHL-GDKGAVPKAI 128
                          68*******************.999*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.4E-596129IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-1197128IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-1098128IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGAGSGASGR VLEWEAGLPD ASELTPVSHP LITPALAAAF RINIAGGAFP PAAASPLDDS  60
ALAHDSPTSH LRGGGGGWEA EDAASGSGAC RGGRAGKKAR MVWTPELHHR FVEAVAHLGD  120
KGAVPKAIPP PPSFLTAYGS PFNPHPPSDA SNQRGYCSFP SRDCEKLERD HALQAMGWKR  180
AKDA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG586200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666596e-40AK066659.1 Oryza sativa Japonica Group cDNA clone:J013068K17, full insert sequence.
GenBankAP0032516e-40AP003251.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0446B05.
GenBankAP0149576e-40AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126096e-40CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815041.16e-90transcription factor PCL1-like
SwissprotQ94DH32e-19PCL1_ORYSJ; Transcription factor PCL1
TrEMBLA0A2T7DEJ32e-90A0A2T7DEJ3_9POAL; Uncharacterized protein
STRINGSi002016m1e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.17e-09G2-like family protein