PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG595900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 256aa    MW: 26842.1 Da    PI: 8.505
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG595900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1081.1e-33221571128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk.......kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                          lp GfrF+Ptdeel+ +yL++k+ + +l++  +i+++d+ +++PwdL p          +a+ ++ +f+ ++ +  ++g    ra+ +g+
  Pavir.5NG595900.2.p  22 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GIIPDADLARLHPWDLlPPgggggggGGDADGERFFFYRPATRCWRKGGGVARAAGTGV 110
                          699***************************.99**************6324677654323344456777778888889************ PP

                  NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          W+ +gk+k v+s   ++ vg+k+tLvf +gra+ + +tdW mheyrl
  Pavir.5NG595900.2.p 111 WRPSGKEKLVVSPrCKRPVGTKRTLVFCRGRARGAARTDWAMHEYRL 157
                          ***********9877889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-4513195IPR003441NAC domain
PROSITE profilePS5100542.76822196IPR003441NAC domain
PfamPF023654.9E-2023157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEGRPGGAWR MQGPAGAPVA GLPIGFRFRP TDEELLLHYL RRKALACPLP AGIIPDADLA  60
RLHPWDLLPP GGGGGGGGGD ADGERFFFYR PATRCWRKGG GVARAAGTGV WRPSGKEKLV  120
VSPRCKRPVG TKRTLVFCRG RARGAARTDW AMHEYRLLPA GLHPFHGCAA AGSSTATHVS  180
CHGAAADWVV CRIFKRTKPA AHRGREDDDA EEMPSSPSSA SSCVTDTSEA GDQEHDDDEG  240
SSSNGGGSSC SVASN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-262220017169NO APICAL MERISTEM PROTEIN
1ut4_B8e-262220017169NO APICAL MERISTEM PROTEIN
1ut7_A8e-262220017169NO APICAL MERISTEM PROTEIN
1ut7_B8e-262220017169NO APICAL MERISTEM PROTEIN
4dul_A8e-262220017169NAC domain-containing protein 19
4dul_B8e-262220017169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.43980.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG595900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699701e-146EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817662.11e-142NAC domain-containing protein 83-like isoform X1
TrEMBLA0A3L6SID01e-141A0A3L6SID0_PANMI; NAC domain-containing protein 83-like isoform X1
STRINGPavir.Eb03721.1.p1e-154(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.16e-31NAC domain containing protein 47