PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG606200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 138aa    MW: 14862 Da    PI: 10.4101
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG606200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.83.5e-192559135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ C+tt Tp+WR gp g+++LCnaCG++yrkk++
  Pavir.5NG606200.1.p 25 CVECRTTATPMWRGGPTGPRSLCNACGIRYRKKRR 59
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-141976IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-132160No hitNo description
Gene3DG3DSA:3.30.50.108.1E-152460IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.1762555IPR000679Zinc finger, GATA-type
CDDcd002021.30E-112560No hitNo description
PfamPF003204.8E-172559IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402550IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MMDSAEHKVI GIAAAAAAEP GRPCCVECRT TATPMWRGGP TGPRSLCNAC GIRYRKKRRQ  60
ELGLDNNKKP QQNQQQPQPP QQPQQHQDHS PAPSAVSDNK SSGLQVVKKR RVLMGVEEAA  120
ILLMALSSSS RSTLLHG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.319491e-167leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG606200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280121e-89KJ728012.1 Zea mays clone pUT6147 C2C2-GATA transcription factor (GATA12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807325.15e-63GATA transcription factor 23-like
TrEMBLA0A3L6REC34e-65A0A3L6REC3_PANMI; GATA transcription factor 23-like
STRINGPavir.J31164.1.p8e-62(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-20GATA transcription factor 23