PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG606200.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GATA

Protein Properties

Length: 102aa MW: 11254.8 Da PI: 10.6166

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG606200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	28.3	2.4e-09	5	23	17	35
GATA 17 dgnktLCnaCGlyyrkkgl 35 +k+LCnaCG++yrkk++ Pavir.5NG606200.2.p 5 AEHKSLCNACGIRYRKKRR 23 57999***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00320	1.1E-6	6	23	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.7E-5	6	24	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MMDSAEHKSL CNACGIRYRK KRRQELGLDN NKKPQQNQQQ PQPPQQPQQH QDHSPAPSAV 60 SDNKSSGLQV VKKRRVLMGV EEAAILLMAL SSSSRSTLLH G*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.31949	1e-118	leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG606200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807325.1	2e-30	GATA transcription factor 23-like
TrEMBL	A0A2T7E8F5	2e-31	A0A2T7E8F5_9POAL; Uncharacterized protein
TrEMBL	A0A3L6REC3	4e-31	A0A3L6REC3_PANMI; GATA transcription factor 23-like
STRING	Pavir.J34225.1.p	5e-34	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.5NG606200.2.p