PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG618000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HB-other

Protein Properties

Length: 1171aa MW: 128176 Da PI: 8.7418

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG618000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18	4.8e-06	74	130	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++lF+ + ++ ++e +e++ +g+t +qV+ +F +R + +k Pavir.5NG618000.1.p 74 KRPRDLLNPKAVKCMQSLFALKDTVGKKETREISLLCGVTVTQVREFFTSQRSRVRK 130 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.665	71	131	IPR001356	Homeobox domain
SMART	SM00389	0.0066	73	135	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-6	73	133	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-4	74	130	IPR009057	Homeodomain-like
CDD	cd00086	0.00209	74	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1171 aa Download sequence Send to blast
MELVPFKPAA GALVEAGSGT GAGSIPAMVA AQQQMLHEQA DQLQRLVVAQ CRLTGVNPLA 60 QEMAAGALSI KIGKRPRDLL NPKAVKCMQS LFALKDTVGK KETREISLLC GVTVTQVREF 120 FTSQRSRVRK FVQLSREKAL RVEASKEHDK ACSISTDQIP LDIEAQAEVI EPLRTLEPVV 180 PQSSSQPMGV PQISSQPIGL PQGLLQPMEV FQNSLQQATA QQNFAAPVML SGTTGVQPTD 240 ANISSDSVQK EIKKEEVHPG VESEDKKFLE SIFALMRKEE TFSGQVKLLE WILQINNVTV 300 LSWFVTMGGL TIMSTWLSLA AIEEQTSVIL VIFKVLLHLP LHKALPAHMS VVLQTINRLR 360 FYRTQDISSK ARNLLSRLSK VLVRSQALKK PQKELMCKQR ISEILRDESW KSEVDITEEI 420 LALTDGANES SKPEPRKAPM LLTAAADENK RTATQTKSKQ KRKVLLVEPP NKKAAVKNVN 480 SVRNISTNNS RPLSADDIQK AKMRAMFMQE KYGKVDTSKA SDKPQALETP KTSGLVNSTV 540 LPVPRNSLRS TAQLVDTSPS TSNQSTVPQP DKPEISGGLK LSIGSQKNVI EKLDSRRVPW 600 RIPPAVWIDP SWSVGDGDSS KELEVQTQRN RREKETFYAS QKDTPLNPKD PWDLEMDFDD 660 SLTPEIPIDQ APDADTMETD SVGAAPNAVA PVEDKQIGST SSTSVSVVNS MNGEDPEPDL 720 ELLTVLLKNP QLVFALTSNN GENVTSEQTV ALLDTLKRTG LGLSELVNTL GNGAGPPKEP 780 EPEPIPTSLP SPTPSDQTRA AWGSEHPPPA RAPNLQQPQL SNRGNTPPIA NTVQQSFSNV 840 ISSLPSQPYA PVSVLPAQIQ ANVPSLPQLA VSINSPIQHV SPVNNHLDRA SVHQHGQQYA 900 LASDPVAISL HQQAAVNKSP HGLQSIPNHS VVHSSMPEPD ASYTTLPWQS NPAHVTNIGR 960 NATAEPWAAR TTNSYNTASA STVPYASQNA FGDQRTHSAY NPYGSAAVSS QTVLQGHGRD 1020 RNGYSRPTEY QTMVRDGHQR HSRSPDPSAG RNYGGTQGYK QQPLTHWSAG QGQQSYNTEP 1080 SRQWSSAQQS YTPAEPSTKQ WSSAHQSYAP AEPSRRWSSE RQSYNVEPSR PWSSGQQGQN 1140 PEASRQWNLG KQDPYNPSDG RRSYDHHWRR *

Sequence ? help Back to Top

Protein Sequence Length: 1171 aa Download sequence Send to blast

MELVPFKPAA GALVEAGSGT GAGSIPAMVA AQQQMLHEQA DQLQRLVVAQ CRLTGVNPLA  60
QEMAAGALSI KIGKRPRDLL NPKAVKCMQS LFALKDTVGK KETREISLLC GVTVTQVREF  120
FTSQRSRVRK FVQLSREKAL RVEASKEHDK ACSISTDQIP LDIEAQAEVI EPLRTLEPVV  180
PQSSSQPMGV PQISSQPIGL PQGLLQPMEV FQNSLQQATA QQNFAAPVML SGTTGVQPTD  240
ANISSDSVQK EIKKEEVHPG VESEDKKFLE SIFALMRKEE TFSGQVKLLE WILQINNVTV  300
LSWFVTMGGL TIMSTWLSLA AIEEQTSVIL VIFKVLLHLP LHKALPAHMS VVLQTINRLR  360
FYRTQDISSK ARNLLSRLSK VLVRSQALKK PQKELMCKQR ISEILRDESW KSEVDITEEI  420
LALTDGANES SKPEPRKAPM LLTAAADENK RTATQTKSKQ KRKVLLVEPP NKKAAVKNVN  480
SVRNISTNNS RPLSADDIQK AKMRAMFMQE KYGKVDTSKA SDKPQALETP KTSGLVNSTV  540
LPVPRNSLRS TAQLVDTSPS TSNQSTVPQP DKPEISGGLK LSIGSQKNVI EKLDSRRVPW  600
RIPPAVWIDP SWSVGDGDSS KELEVQTQRN RREKETFYAS QKDTPLNPKD PWDLEMDFDD  660
SLTPEIPIDQ APDADTMETD SVGAAPNAVA PVEDKQIGST SSTSVSVVNS MNGEDPEPDL  720
ELLTVLLKNP QLVFALTSNN GENVTSEQTV ALLDTLKRTG LGLSELVNTL GNGAGPPKEP  780
EPEPIPTSLP SPTPSDQTRA AWGSEHPPPA RAPNLQQPQL SNRGNTPPIA NTVQQSFSNV  840
ISSLPSQPYA PVSVLPAQIQ ANVPSLPQLA VSINSPIQHV SPVNNHLDRA SVHQHGQQYA  900
LASDPVAISL HQQAAVNKSP HGLQSIPNHS VVHSSMPEPD ASYTTLPWQS NPAHVTNIGR  960
NATAEPWAAR TTNSYNTASA STVPYASQNA FGDQRTHSAY NPYGSAAVSS QTVLQGHGRD  1020
RNGYSRPTEY QTMVRDGHQR HSRSPDPSAG RNYGGTQGYK QQPLTHWSAG QGQQSYNTEP  1080
SRQWSSAQQS YTPAEPSTKQ WSSAHQSYAP AEPSRRWSSE RQSYNVEPSR PWSSGQQGQN  1140
PEASRQWNLG KQDPYNPSDG RRSYDHHWRR *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	753	758	DTLKRT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4962	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG618000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815839.1	0.0	homeobox protein LUMINIDEPENDENS isoform X1
TrEMBL	A0A2S3HNA2	0.0	A0A2S3HNA2_9POAL; Uncharacterized protein
STRING	Pavir.Eb03820.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-118	HB-other family protein

Link Out ? help Back to Top
Phytozome	Pavir.5NG618000.1.p