PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG619500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 165aa    MW: 17466.3 Da    PI: 6.6734
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG619500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.42.8e-5519114297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++ yl+kyr
  Pavir.5NG619500.1.p  19 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDDYVDPMRRYLHKYR 108
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          eleg++
  Pavir.5NG619500.1.p 109 ELEGDR 114
                          ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-5115125IPR009072Histone-fold
SuperFamilySSF471134.35E-3921127IPR009072Histone-fold
PfamPF008084.5E-272487IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-175270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.7E-177189No hitNo description
PRINTSPR006151.7E-1790108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MADHHGQGGR GGPGAEEIKE QDRLLPIANV GRIMKQILPP NAKISKEAKE TMQECVSEFI  60
SFVTGEASDK CHKEKRKTVN GDDVCWAFGA LGFDDYVDPM RRYLHKYREL EGDRAAAAAS  120
SRGGGGSTST SAGPDAGAGA GPSSGHFMFG AMDRSDNNSS SRPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-4418109192Transcription factor HapC (Eurofung)
4g92_B7e-4418109192Transcription factor HapC (Eurofung)
5g49_A7e-4418109697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.315160.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG619500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701981e-150EU970198.1 Zea mays clone 342117 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635864.14e-79nuclear transcription factor Y subunit B-1
RefseqXP_015635872.14e-79nuclear transcription factor Y subunit B-1
SwissprotO822482e-57NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A3L6SKD51e-78A0A3L6SKD5_PANMI; Nuclear transcription factor Y subunit B-1-like
STRINGPavir.Eb03826.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-57nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]