PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG626900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 215aa    MW: 24085 Da    PI: 7.8614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG626900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.11.2e-21251534128
                  NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk..atgkdke 91 
                          Gf F+Pt++elv ++L+++++g + +++ ++ e+d + + Pw+L +++   +++ +fF+ r++   +g+ ++ ++ +g W   +t   ++
  Pavir.5NG626900.1.p  25 GFDFDPTEDELVLHFLRPQLRGLPPRVAGAVLEADPCAAAPWELLARYG-LREQGHFFAARARGRGRGSVRRAVAGAGAWMhsSTRAGRS 113
                          9**************************999**************85553.35677********9999887777999****8445677899 PP

                  NAM  92 vlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                          v++ +  + + + ++ fy   +g  p  ++t Wvm+ey++
  Pavir.5NG626900.1.p 114 VTDFGVVVRWSRVSFCFYaqgRGAGPGQRSTGWVMEEYEI 153
                          9998889999********87778889999*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.95922180IPR003441NAC domain
SuperFamilySSF1019413.4E-3123179IPR003441NAC domain
PfamPF023659.8E-1425153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEEEELKNLS AEEGPDYLPA GDLGGFDFDP TEDELVLHFL RPQLRGLPPR VAGAVLEADP  60
CAAAPWELLA RYGLREQGHF FAARARGRGR GSVRRAVAGA GAWMHSSTRA GRSVTDFGVV  120
VRWSRVSFCF YAQGRGAGPG QRSTGWVMEE YEITDPRCYR RCDEEGEEDD YWVLCRVRKS  180
RRSSPPPAKN KRQWRRVDDL QPDSTKISSQ PLRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG626900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816116.11e-108NAC domain-containing protein 18-like
TrEMBLA0A3L6PL561e-108A0A3L6PL56_PANMI; NAC domain-containing protein 2-like
STRINGPavir.Eb03851.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-10NAC domain containing protein 47