PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG036500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 652aa MW: 73932.4 Da PI: 5.3593

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG036500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27	1.4e-08	111	159	44	90
FAR1 44 ekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ekkk ++r++++ +t+Ck +++vk+ +kw+v+ + +HnH+l+ Pavir.6KG036500.1.p 111 EKKKkldGGTKRKREKMLHTDCKDRMVVKLI-ADKWHVIFFAPDHNHDLV 159 222234457788899999***********.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-6	111	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-14	254	313	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.545	419	455	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MDLNEFPPEL DYDFLDESIA NPSYYTQAPL CDASLRGSEH NNAGNDLYNQ NDSDNQNADA 60 CSLNNPEDAA TPDQLVLGVT EEVEEDIWLT PPVPYGGQTF SKPDDGNDNA EKKKKLDGGT 120 KRKREKMLHT DCKDRMVVKL IADKWHVIFF APDHNHDLVH KPSLKKFLRS HKGIPKPDKD 180 FIALLHGCNL SSGRIIQLMN EFFYSAQLVP HEGKDQDAEF FYKIKLDAAH KVECLFWVDG 240 AARHAYIESY SDLVSFDATY MINMYDMPFA PFIGINRHGQ SFMLGCAFIR DEKIPSYVWL 300 FDILRSNARE SPCPILAVDE KLEEDFKECL NYTVTLDEFE SKWSAMDGQD FRTDDRERRR 360 WSKYPIEIHA SAVYTKNLFY RFSKEFEKTA EYDVRPEGQF LYLLEPNNKF VYGYGKRTYI 420 VTAVVEEESY YCECSKFDGD GMFCCHIMKI LTRLDVKTIP QRYILKRWTK EAIPENENVD 480 PNAHVPADFI ASGMPLNNKK TLWFTNLSTA FTGLVVEGCA SKETYTIMDG HIKMMRAEID 540 EIKQRKKNNA QKVRGSKCAP SVCVYGDDNT ANMTIIASAD AQSVPGPIVH NVLSEHDTNV 600 NENTASTGVD DAALVGITND VDGASALMAD VGNPPRSKVK GRKKDKRFKK G*

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MDLNEFPPEL DYDFLDESIA NPSYYTQAPL CDASLRGSEH NNAGNDLYNQ NDSDNQNADA  60
CSLNNPEDAA TPDQLVLGVT EEVEEDIWLT PPVPYGGQTF SKPDDGNDNA EKKKKLDGGT  120
KRKREKMLHT DCKDRMVVKL IADKWHVIFF APDHNHDLVH KPSLKKFLRS HKGIPKPDKD  180
FIALLHGCNL SSGRIIQLMN EFFYSAQLVP HEGKDQDAEF FYKIKLDAAH KVECLFWVDG  240
AARHAYIESY SDLVSFDATY MINMYDMPFA PFIGINRHGQ SFMLGCAFIR DEKIPSYVWL  300
FDILRSNARE SPCPILAVDE KLEEDFKECL NYTVTLDEFE SKWSAMDGQD FRTDDRERRR  360
WSKYPIEIHA SAVYTKNLFY RFSKEFEKTA EYDVRPEGQF LYLLEPNNKF VYGYGKRTYI  420
VTAVVEEESY YCECSKFDGD GMFCCHIMKI LTRLDVKTIP QRYILKRWTK EAIPENENVD  480
PNAHVPADFI ASGMPLNNKK TLWFTNLSTA FTGLVVEGCA SKETYTIMDG HIKMMRAEID  540
EIKQRKKNNA QKVRGSKCAP SVCVYGDDNT ANMTIIASAD AQSVPGPIVH NVLSEHDTNV  600
NENTASTGVD DAALVGITND VDGASALMAD VGNPPRSKVK GRKKDKRFKK G*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG036500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679997.1	1e-102	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A3L6S9Q1	0.0	A0A3L6S9Q1_PANMI; Uncharacterized protein
STRING	Pavir.Fa02303.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7287	5	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-26	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.6KG036500.1.p