PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG040300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 187aa    MW: 20537.1 Da    PI: 10.0796
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG040300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.15.2e-14139185255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr      +W+A Ir p+e   r+r +lg+f+taeeAa a+++a+ +l+g
  Pavir.6KG040300.1.p 139 QYRGVRC-V---KWEADIRLPRE---RTRLWLGTFDTAEEAALAYDQAAYRLRG 185
                          7999983.3...5*******976...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM006144.4E-101969IPR003656Zinc finger, BED-type
PROSITE profilePS5080810.0851973IPR003656Zinc finger, BED-type
SuperFamilySSF576674.17E-92263No hitNo description
PfamPF028921.6E-122363IPR003656Zinc finger, BED-type
CDDcd000181.25E-17138185No hitNo description
Gene3DG3DSA:3.30.730.106.5E-19139186IPR001471AP2/ERF domain
SMARTSM003803.0E-13139187IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-13139186IPR016177DNA-binding domain
PROSITE profilePS5103215.58139187IPR001471AP2/ERF domain
PRINTSPR003673.6E-6140151IPR001471AP2/ERF domain
PfamPF008471.3E-7140185IPR001471AP2/ERF domain
PRINTSPR003673.6E-6159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAESSTQGRR KQARGNKLAP RSGVWAHFTR LRDDDGKVEC NRCGAQLSAR HGTTSLWKHL  60
NKKKVCSGQE EEADDAAAGG VGAARPPHQD QQPPPLLPAT PPSPAAGAHE HELQLQRSLK  120
PAVPVPPPPP PAPQRPQKQY RGVRCVKWEA DIRLPRERTR LWLGTFDTAE EAALAYDQAA  180
YRLRGDA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.39973e-36callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG040300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J19681.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.15e-10ERF family protein