PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG043600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 143aa    MW: 16334.6 Da    PI: 8.1069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG043600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.1e-17511301197
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          ++ +++++p kfa+++ g+   s  ++le ++g+ ++v++  ++  ++ v++ GW  F++a +L++gD++vF++ g+s f  +v ++
  Pavir.6KG043600.1.p  51 FQ-QQMIVPEKFAKNFRGQ--ISGVVKLEAPDGNLYSVNV--SQDLNKLVFRYGWGTFCSAYELEQGDMLVFRYRGDSHF--KVLIY 130
                          44.46999*****988777..5669***************..999999**************************999999..66555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.65E-2236131IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-2237132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.23840133IPR003340B3 DNA binding domain
CDDcd100173.97E-2241131No hitNo description
SMARTSM010192.9E-1043133IPR003340B3 DNA binding domain
PfamPF023622.3E-1545130IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MASRDPEVHG MSAHEMSGNS SKRCSHCDSH YYWHHLDDRQ KHFFKLMLGD FQQQMIVPEK  60
FAKNFRGQIS GVVKLEAPDG NLYSVNVSQD LNKLVFRYGW GTFCSAYELE QGDMLVFRYR  120
GDSHFKVLIY SPRIIVLAAA AP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG043600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176100.19e-51B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_020176101.19e-51B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_020176102.19e-51B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_020176103.19e-51B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_020176104.19e-51B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_020176105.17e-51B3 domain-containing protein LOC_Os12g40080-like isoform X2
SwissprotQ2QMT62e-37Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A2T7EIN77e-78A0A2T7EIN7_9POAL; Uncharacterized protein
STRINGPavir.Fa02304.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-21B3 family protein