PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG050900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 374aa    MW: 39114.2 Da    PI: 9.4511
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG050900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.4e-11102146347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+++++ + ++lG+g W+ I+r     Rt+ q+ s+ qky
  Pavir.6KG050900.1.p 102 AWTEDEHKKFLLGLNKLGKGAWRGISRNYVISRTPTQVASHAQKY 146
                          7*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.103.4E-42745IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.6972742IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.294151IPR017930Myb domain
SuperFamilySSF466893.9E-1596152IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-1798150IPR006447Myb domain, plants
SMARTSM007178.4E-999149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-9101148IPR009057Homeodomain-like
CDDcd001673.86E-7102147No hitNo description
PfamPF002499.4E-10102146IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTRDGVPPAA PPPPAAAGAG GGGDGPRRCS QCGHHGHNAR TCTARPVKLF GVRIGDRPMP  60
IRKSASMGNL AQLAAEGGGG GGGREEGYGS DGERPHKKRG EAWTEDEHKK FLLGLNKLGK  120
GAWRGISRNY VISRTPTQVA SHAQKYFNRQ TNVHRRKRRS SLFDMVIDDS SDQLPLSRSS  180
SQEVEQDDPQ SVAALPAPVV SPADVAPPPV SVEAPASVPL PVQVPVPVTT PQPMEQDSVA  240
SSSSAGQAGV VMPEAVPPNL YPMMIPPPYY HPAFVPVPCY GYVPFNYGGP PGVAQVPHEV  300
VKPVAVHSTP PLNVKDLYNM SELSLKGDDP NANSGVPASP LPPKPIGRPE RQSAFHGKGP  360
AGGSSGGLIF AVK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.33250.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG050900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820943.10.0transcription factor MYBS3-like
TrEMBLA0A2S3I0820.0A0A2S3I082_9POAL; Uncharacterized protein
TrEMBLA0A3L6PKN80.0A0A3L6PKN8_PANMI; Transcription factor MYB1R1-like
STRINGPavir.Fa01963.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129002629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-38MYB_related family protein