PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG070500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 721aa    MW: 78993.7 Da    PI: 6.5195
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG070500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-152468147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r rWT+ E++++++a k++G   W +I +++g ++t+ q++s+ qk+
  Pavir.6KG070500.1.p 24 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 68
                         78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-161874IPR009057Homeodomain-like
PROSITE profilePS5129419.1471973IPR017930Myb domain
TIGRFAMsTIGR015571.6E-162271IPR006447Myb domain, plants
SMARTSM007176.5E-122371IPR001005SANT/Myb domain
PfamPF002491.5E-122467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-82464IPR009057Homeodomain-like
CDDcd001671.03E-82669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MEVNSSGEEM VVKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ  60
IRSHAQKFFT KLEKEAMNNG TSPGQAHDID IPPPRPKRKP NSPYPRKSGL SSETPSKEVP  120
NDKSTKSNIT VGNGNVQMAG DASLQKFQRK EVSEKGSCSE VLNLFRDAPS ASFSSVNKSS  180
SNNGVLRGIE LTKKEIRDMT TMEKNSINPT MQEDVKEIND QEMGRVNGIH VSSKCDHSNE  240
EYLDFSMQQM KLHPKSLETT YVDKQTARTS HTLAERNGAT SIPVTGTEGT HPDQTSDQVG  300
VNGSMNPCIH PMLSMDLKFD SSATPQSFPH NYAAFAPVMQ CNCNQDTYRS FVNMSSTFSS  360
MLVSTLLSNP AVHAAARLAA SYWPAAEGNT HVDPNQENPA EGVQGRNLGS PPSMASIVAA  420
TVAAASAWWA TQGLLPFLAP PMAFPFVPAP SAAFPTADLP RPSEKDRDCL VENAQKECQE  480
AQKQGQSEAL RVVASSESGG SRKGDMSIHT ELKISHVLNA EATPTTGADT SDALRNKKKQ  540
DRSSCGSNTP SSSDVEAENV PEKEDKANDK AKQASCSNSS AGDTNHRRFR SSGSTSDSWK  600
EVSEEGRLAF DALFSREKLP QSFSPPQAEE SKEVANEEED EVTTVTVDLN KNVTSIDHEL  660
DMMDEPRTSF PNELSHLKLK SRKTGFKPYK RCSVEAKENR APASDEVGTK RIRLESEAST  720
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.19370.0callus| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG070500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9555440.0EU955544.1 Zea mays clone 1536169 LHY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820794.10.0protein LHY isoform X1
RefseqXP_025820795.10.0protein LHY isoform X1
TrEMBLA0A2T8IF630.0A0A2T8IF63_9POAL; Uncharacterized protein
STRINGPavir.Fa01905.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.12e-41circadian clock associated 1