PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG070600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 235aa    MW: 26964.9 Da    PI: 11.0679
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG070600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-1556118163
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-T CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltk 63 
                          f+kvltpsdv+k++rlv+pk++ae++      +++l +ed+ g  W+++++y+++s++yv+tk
  Pavir.6KG070600.1.p  56 FDKVLTPSDVGKLNRLVVPKQHAERFFPAAGAGTQLCFEDRGGVPWRFRYSYWGSSQSYVMTK 118
                          89************************555567789**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-2349118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.09E-1652118IPR015300DNA-binding pseudobarrel domain
CDDcd100178.42E-1654118No hitNo description
PfamPF023623.9E-1356118IPR003340B3 DNA binding domain
SMARTSM010192.1E-456155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MYMDLSLGTT VEDTQEEEHQ EEEQEDDLCQ QQALGQDLQH GGGEPSHVME RREHMFDKVL  60
TPSDVGKLNR LVVPKQHAER FFPAAGAGTQ LCFEDRGGVP WRFRYSYWGS SQSYVMTKVQ  120
GVEPLRPRRA ARRGGHRLIL PRRRRRRRPI LHRLPPLPAP QPRHQLRRCC RCAGVAHGRR  180
RGPSSEGVQR WSPWTRRPSP PAMASRTPAS CPKLHILLAE SLLLKQKNEV VRRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-3049118174B3 domain-containing transcription factor NGA1
5os9_B2e-3049118174B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132144RGGHRLILPRRRR
2140148PRRRRRRRP
3141147RRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG070600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284101e-102KJ728410.1 Zea mays clone pUT6715 ABI3VP1 transcription factor (ABI23) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974419.11e-65putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD55e-40Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLA0A2T7D3L53e-64A0A2T7D3L5_9POAL; Uncharacterized protein
TrEMBLK3YJE32e-64K3YJE3_SETIT; Uncharacterized protein
STRINGPavir.Fa01903.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-32B3 family protein