PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG079800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 420aa MW: 45119.3 Da PI: 9.175

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG079800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	127	162	3	38
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 ++k +rr+++NReAAr+sR+RKka+i++Le+ +L Pavir.6KG079800.1.p 127 RDKTQRRLAQNREAARKSRLRKKAYIQNLETSRMKL 162 79****************************855444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.8E-8	124	171	No hit	No description
SMART	SM00338	0.0071	125	178	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-7	127	164	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.048	127	169	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.85E-6	129	167	No hit	No description
PROSITE pattern	PS00036	0	132	147	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.2E-27	213	292	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MELYPGYLED HFNIHKLNRL QPLAASGAHP GRYADAAAAA GPGAMGIYGR QRHQMAAVGA 60 WGDPFRPDGD ALAAPLAAVA PVTVAAAADV VETESKLGTR LAQHDVVAVE EAPPSSDSFG 120 HDDARPRDKT QRRLAQNREA ARKSRLRKKA YIQNLETSRM KLARLEQELA MARRQQGAHA 180 GGGGVLAPAV ADPRVAAFEV EYARWVEEQE KQAEELRAAL QPGGALAPAQ ELQLRLLVDA 240 AVAHYGALFE ARARAARADA FFVLSGVWRA PAERFFLWIG GFRPSELLKV LAPRLGPLPE 300 PQASAVRALQ NTARQLEDAL SQGMAKLQQT LVDALMTVDA PDGGAGGYAA RQMASAVGKL 360 DDLVSFVDQA DHLRQLTLRN MSEILTVPQA ARGLLALADY SQRLRALSSL WAARPREPA*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MELYPGYLED HFNIHKLNRL QPLAASGAHP GRYADAAAAA GPGAMGIYGR QRHQMAAVGA  60
WGDPFRPDGD ALAAPLAAVA PVTVAAAADV VETESKLGTR LAQHDVVAVE EAPPSSDSFG  120
HDDARPRDKT QRRLAQNREA ARKSRLRKKA YIQNLETSRM KLARLEQELA MARRQQGAHA  180
GGGGVLAPAV ADPRVAAFEV EYARWVEEQE KQAEELRAAL QPGGALAPAQ ELQLRLLVDA  240
AVAHYGALFE ARARAARADA FFVLSGVWRA PAERFFLWIG GFRPSELLKV LAPRLGPLPE  300
PQASAVRALQ NTARQLEDAL SQGMAKLQQT LVDALMTVDA PDGGAGGYAA RQMASAVGKL  360
DDLVSFVDQA DHLRQLTLRN MSEILTVPQA ARGLLALADY SQRLRALSSL WAARPREPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG079800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820315.1	0.0	transcription factor TGA2.3-like isoform X1
Swissprot	A0A0P0WFC8	1e-121	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A3L6PQP3	0.0	A0A3L6PQP3_PANMI; Transcription factor HBP-1b(C38)-like isoform X1
STRING	Si013962m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	7e-85	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.6KG079800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]