PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG090400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 239aa    MW: 26470.1 Da    PI: 4.3038
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG090400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC143.93.7e-45721751101
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw+ q    +++tdfk h+lPlarikki+kad dv +i+ eaPvl++kace+fi eltlr+w ha+e krrtlkk+d++aa++ t+
  Pavir.6KG090400.1.p  72 QLQAFWSGQldeSKQTTDFKTHSLPLARIKKIMKADSDVPRIAGEAPVLFAKACEMFIQELTLRAWFHADEDKRRTLKKNDVTAALSGTE 161
                          89*****996656789************************************************************************** PP

                NF-YC  88 ifdflvdivprdel 101
                          +fdflvd+ p d+l
  Pavir.6KG090400.1.p 162 VFDFLVDTGPSDKL 175
                          ********999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.44E-3039166IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.0E-3286157IPR009072Histone-fold
PfamPF008083.5E-2194157IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDMEKQPSET TVNQGMTNGD TPAALASVSP SAGTSIAPAS QDAPVDPVIQ PHSLDQNQVA  60
SQQTHNSHQQ QQLQAFWSGQ LDESKQTTDF KTHSLPLARI KKIMKADSDV PRIAGEAPVL  120
FAKACEMFIQ ELTLRAWFHA DEDKRRTLKK NDVTAALSGT EVFDFLVDTG PSDKLKGDGA  180
VLPTTTTVQE EDDDPYRDYC WDDYSPPWSP DDSPGPDLRN VTCDDPRYYT YIHEYYSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-4180171394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150RRTLKKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG090400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321034.11e-78nuclear transcription factor Y subunit C-3
TrEMBLA0A3L6PNJ31e-150A0A3L6PNJ3_PANMI; Uncharacterized protein
STRINGPavir.Fa02054.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1972668
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-50nuclear factor Y, subunit C2