PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG100100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 474aa MW: 54510.5 Da PI: 9.1762

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG100100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.4e-20	63	187	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................................tekerrt 54 fYn+YA+++GFsvr+ +s+ s +e +k fvC+keg+ ++ k++ ++r++ Pavir.6KG100100.1.p 63 FYNSYARRIGFSVRTGTSRLSGPAREQKKVMFVCNKEGHGRKGKEEvppaesddsnyeigesetennnegkgnadidkkkqldGGRKRKR 152 9******************999999***********9999*****************************99988888999 PP FAR1 55 raetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++ +t+Cka+++vk+ ++w+v+ + +HnH+l+ Pavir.6KG100100.1.p 153 EKMLHTDCKARMVVKMI-GDRWHVIYFAPDHNHDLV 187 9999*********.9************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-19	63	187	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MDVSNDEGPN GDDIGAVGNN ITEDAPTMVD NTQDVAVAED IWSTLPVPYT GQTFGTKQEA 60 RAFYNSYARR IGFSVRTGTS RLSGPAREQK KVMFVCNKEG HGRKGKEEVP PAESDDSNYE 120 IGESETENNN EGKGNADIDK KKQLDGGRKR KREKMLHTDC KARMVVKMIG DRWHVIYFAP 180 DHNHDLVVKP SLKKFMRSHK GIPREKKEFI ALLHGCNLST GRIMQLMNEF YGSAQLVPYE 240 GKDVGNFHST IRKTEKYRDI QEMLDYFKEL EKEDPKFFYK IRLDGEHRVE SLFWVDGAAR 300 HAYIESYHDC VSFDSFETFL EVMKGKAPST QRSEGFNSVL KRQYQKIYDK CLVAQDGKDF 360 RTDDRDRRRW SKYHIEKFSK EFEKTAEYDV ISGSEFQYYL VPNNKFVYGY GKRTYLVTAI 420 EDEGSYYYPV GNPPRSKVKG RKKEKRLKKG MNEEAKKKNK CGICKSSGCR KAC*

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MDVSNDEGPN GDDIGAVGNN ITEDAPTMVD NTQDVAVAED IWSTLPVPYT GQTFGTKQEA  60
RAFYNSYARR IGFSVRTGTS RLSGPAREQK KVMFVCNKEG HGRKGKEEVP PAESDDSNYE  120
IGESETENNN EGKGNADIDK KKQLDGGRKR KREKMLHTDC KARMVVKMIG DRWHVIYFAP  180
DHNHDLVVKP SLKKFMRSHK GIPREKKEFI ALLHGCNLST GRIMQLMNEF YGSAQLVPYE  240
GKDVGNFHST IRKTEKYRDI QEMLDYFKEL EKEDPKFFYK IRLDGEHRVE SLFWVDGAAR  300
HAYIESYHDC VSFDSFETFL EVMKGKAPST QRSEGFNSVL KRQYQKIYDK CLVAQDGKDF  360
RTDDRDRRRW SKYHIEKFSK EFEKTAEYDV ISGSEFQYYL VPNNKFVYGY GKRTYLVTAI  420
EDEGSYYYPV GNPPRSKVKG RKKEKRLKKG MNEEAKKKNK CGICKSSGCR KAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	153	RKRKREK
2	147	154	RKRKREKM
3	439	446	GRKKEKRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG100100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311908.1	1e-115	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2T7D5A3	1e-173	A0A2T7D5A3_9POAL; Uncharacterized protein
STRING	Pavir.Fa01175.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7287	5	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-25	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.6KG100100.1.p