PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG101600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 209aa    MW: 21304 Da    PI: 9.6832
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG101600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.6e-212676256
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         + +GVr ++ +gr++AeIrd +     r +r++lg+f+t+eeAa+a++aa+++l+g+
  Pavir.6KG101600.1.p 26 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEEAARAYDAAARRLRGP 76
                         679******.**********44.....55**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-142575IPR001471AP2/ERF domain
CDDcd000187.99E-172585No hitNo description
SuperFamilySSF541712.03E-212684IPR016177DNA-binding domain
PROSITE profilePS5103223.3272683IPR001471AP2/ERF domain
SMARTSM003801.4E-292689IPR001471AP2/ERF domain
PRINTSPR003676.5E-102738IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-292884IPR001471AP2/ERF domain
PRINTSPR003676.5E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAPRRSTSPA GSSGSSGGSG AEQQPRLRGV RKRPWGRYAA EIRDPVRKAR VWLGTFDTPE  60
EAARAYDAAA RRLRGPGAAT NYPAQGAKAP AASASGSIGL SEDASSSCSS RDSPRAVTAS  120
VAAPPSLDLS LALPAMATTP SSHHMFMDPA STMVAVAPAL LQFLPPKSEE EQSLSGLSSW  180
SSSVVFDAAP AVGLGLDLNL ALPAGMVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-201885774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG101600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4937231e-78AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821473.11e-77ethylene-responsive transcription factor 4-like
TrEMBLA0A2S3I1172e-76A0A2S3I117_9POAL; Uncharacterized protein
TrEMBLA0A2T7D4R82e-76A0A2T7D4R8_9POAL; Uncharacterized protein
STRINGPavir.Fa01794.1.p5e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.16e-19ERF domain protein 11