PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG101800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 219aa    MW: 22315.2 Da    PI: 10.1443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG101800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-203282256
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         + +GVr ++ +gr++AeIrd +     r +r++lg+f+t+e+Aa+a++aa+++l+g+
  Pavir.6KG101800.1.p 32 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEDAARAYDAAARRLRGP 82
                         679******.**********44.....55**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.45E-173191No hitNo description
PfamPF008471.2E-133181IPR001471AP2/ERF domain
PROSITE profilePS5103223.3413289IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-213290IPR016177DNA-binding domain
SMARTSM003806.8E-323295IPR001471AP2/ERF domain
PRINTSPR003671.3E-93344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-293490IPR001471AP2/ERF domain
PRINTSPR003671.3E-95571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAPRRSPSPA GSSGSGSAVC APAAAAAGQQ PRLRGVRKRP WGRYAAEIRD PVRKARVWLG  60
TFDTPEDAAR AYDAAARRLR GPRAATNYPA QDPRAVAADA PAASRSGSVA LSEGASSSSS  120
RSRDSPLAVT VAVAAAPSKD LSLALPATPS SYHMFLDPAA TMVAVAPALL QFLPPKSEED  180
QSFSGSCSSS SAVFDAAPAV GLGLDLNLAL PAEMVRCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-203489763ATERF1
3gcc_A2e-203489763ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG101800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701537e-71EU970153.1 Zea mays clone 340982 ethylene-responsive transcription factor 4 mRNA, complete cds.
GenBankEU9753887e-71EU975388.1 Zea mays clone 489369 ethylene-responsive transcription factor 4 mRNA, complete cds.
GenBankKJ7277067e-71KJ727706.1 Zea mays clone pUT5645 AP2-EREBP transcription factor (EREB209) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821472.11e-82ethylene-responsive transcription factor ERF098-like
TrEMBLA0A2T7D4Q31e-72A0A2T7D4Q3_9POAL; Uncharacterized protein
STRINGPavir.Fa01729.1.p6e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.13e-18ERF domain protein 11