PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG102000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 173aa    MW: 18628 Da    PI: 10.8974
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG102000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.41.3e-212878256
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         + +GVr+++ +gr++AeIrd +     r +r++lg+f+t+eeAa+a++aa+++l+g+
  Pavir.6KG102000.1.p 28 RLRGVRRRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEEAARAYDAAARRLRGP 78
                         679******.**********44.....55**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-152777IPR001471AP2/ERF domain
CDDcd000181.47E-162787No hitNo description
SuperFamilySSF541714.97E-222886IPR016177DNA-binding domain
SMARTSM003803.2E-302891IPR001471AP2/ERF domain
PROSITE profilePS5103223.7092885IPR001471AP2/ERF domain
PRINTSPR003674.7E-102940IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-293086IPR001471AP2/ERF domain
PRINTSPR003674.7E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MAPRRPPSPA GSSSSDERAA AEQQQQPRLR GVRRRPWGRY AAEIRDPVRK ARVWLGTFDT  60
PEEAARAYDA AARRLRGPRA ATNYPAAAGE APSSSAADDS RPATPPLPAR RSPYLFLDPA  120
PTTTTTVVPA APAMRHQLLP PKGEEERSRC YPGGSVRLGL DLNLPPPAEM VM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2025851172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.279330.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG102000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4937235e-59AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821653.15e-54ethylene-responsive transcription factor 8-like
TrEMBLA0A2S3I1221e-52A0A2S3I122_9POAL; Uncharacterized protein
TrEMBLA0A2T7D4Q61e-52A0A2T7D4Q6_9POAL; Uncharacterized protein
STRINGPavir.Fa01728.1.p1e-78(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.13e-09ERF domain protein 11