PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG106700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 230aa MW: 26476.2 Da PI: 9.4379

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG106700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.4	1.3e-18	131	221	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +t+s+v+ +l lp +f++++ + +++ t++lede+ ++e + +rk + l++GW++F+ +++L +gD +vF+l++r++f Pavir.6KG106700.1.p 131 FVKPMTQSHVTGGFWLGLPTPFCRKYL-P-KRDETIMLEDEEDDEFETLYLVRKMG----LSAGWRGFAIEHKLVDGDCLVFQLIERTKF 214 89**********************5.3.35669***********555544....***********************98888 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +v ++r+ Pavir.6KG106700.1.p 215 --KVYIIRA 221 ..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.35E-23	125	222	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.5E-21	125	222	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.17E-22	129	220	No hit	No description
Pfam	PF02362	2.9E-16	131	221	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.871	131	222	IPR003340	B3 DNA binding domain
SMART	SM01019	3.0E-20	131	222	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MAEAVSYEEQ RRRQVEANKR KLEELQLHHL SAAVREAAAK PSPAKKRTAR VPRDAAAEPL 60 RRSGRVANLP EKPKYREEVL DFGRKVRRTY GSGRKDLVNR VYATDEERSH AITKAEELAG 120 ELGSRSRFPI FVKPMTQSHV TGGFWLGLPT PFCRKYLPKR DETIMLEDEE DDEFETLYLV 180 RKMGLSAGWR GFAIEHKLVD GDCLVFQLIE RTKFKVYIIR ASSYYEDEE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.31758	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG106700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972573.1	1e-149	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-122	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A368RHI4	1e-148	A0A368RHI4_SETIT; Uncharacterized protein
STRING	Pavir.J28012.1.p	1e-158	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-63	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.6KG106700.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]