PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG106900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 294aa    MW: 32102.6 Da    PI: 10.2044
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG106900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.3e-17180266496
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + +++++ + g + lp  f++eh   +e++  +tlede+g +++ ++     +g   l++GW++F+++++L +gD +vF+l+++++f+ +
  Pavir.6KG106900.1.p 180 KSITKYYASGGSVALPTAFCQEHL--PERDERITLEDEEGHKYSTTY----LPGNLCLSAGWRRFANQHKLVDGDCLVFQLIKTTKFKVR 263
                          456889999999***********4..345668***************....566699*************************99999777 PP

                          EEE CS
                   B3  94 vkv 96 
                          v++
  Pavir.6KG106900.1.p 264 VMW 266
                          765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-20171264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-20171264IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-21176264No hitNo description
PROSITE profilePS5086311.561177268IPR003340B3 DNA binding domain
SMARTSM010198.5E-11178270IPR003340B3 DNA binding domain
PfamPF023621.5E-14179266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTMLPIPPVA PLPIPPVAPG PGARTLPFLS SRRPQLFFFL CSAALPPSSA PPFRSAPRRT  60
RGGEGTADGD GGGGGVRGAE TEAGGGEQAQ ARGAPAPPPL RRRQRGRRQA GQGAEGSAAA  120
AEPLRRSSRV ANLPKKPDYR LGRKDLPDRG SATDEERRHA ITKAQELAEK LDSRFPNFVK  180
SITKYYASGG SVALPTAFCQ EHLPERDERI TLEDEEGHKY STTYLPGNLC LSAGWRRFAN  240
QHKLVDGDCL VFQLIKTTKF KVRVMWKLLQ WLELCYIHSF CSLLISEFLD RTT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG106900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972573.11e-53B3 domain-containing protein Os06g0194400
SwissprotQ69V362e-44Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A368RHI43e-52A0A368RHI4_SETIT; Uncharacterized protein
TrEMBLK3YJI53e-52K3YJI5_SETIT; Uncharacterized protein
STRINGPavir.Fa02099.1.p1e-141(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-28B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]