PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG127500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 228aa MW: 24557.2 Da PI: 9.7294

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG127500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.9	5.8e-32	44	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka +e r++a+++l++eA++r rdP +G+++ ++ l+++ + Pavir.6KG127500.1.p 44 ACAVCKHQRRKCEPNCELAAYFPAHRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNAV 133 7********************************************9977766******************************** PP DUF260 90 lkaelallkee 100 l+ae a+l+++ Pavir.6KG127500.1.p 134 LRAENAALRRQ 144 **9999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.732	43	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-28	44	141	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MYMPLALDVP YMHVHVYACI SLPLPPLHLQ WGRTTGMTGS SGGACAVCKH QRRKCEPNCE 60 LAAYFPAHRM NDFRALHLVF GVANLTKLIK ANATEAARRR AAETLTWEAR WRERDPSEGC 120 YREVSCLRRD NAVLRAENAA LRRQLAEQQQ LLLWSRATAA PTANSNMAGG CYNGSAGGNG 180 LVVAVRPPTH APAAPAAQTM LGGYRGVPVF PATANGRKSA PDAPPSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-16	38	145	5	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-16	38	145	5	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG127500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU973222	1e-155	EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798343.1	6e-93	LOB domain-containing protein 2-like
TrEMBL	A0A2T7C1Z8	1e-91	A0A2T7C1Z8_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I0Y0	1e-91	A0A2T8I0Y0_9POAL; Uncharacterized protein
STRING	Pavir.J05697.1.p	1e-166	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13044	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-15	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	Pavir.6KG127500.1.p