PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG139800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 237aa MW: 25744.1 Da PI: 5.6977

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG139800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	205	227	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ Fs+ L H++ H Pavir.6KG139800.1.p 205 YECKICPAKFSSAQALGGHMSYH 227 99******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.93E-5	202	231	No hit	No description
Pfam	PF13912	1.8E-7	205	229	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.325	205	232	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	207	227	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MNPPPDINST NNEPIVSPLH EALVGTIAMP IVDTSSQSQP IFQAPQEPSK MPMNHNSTLP 60 NFTEERLPLS SLFPHTVPTT VTPVGSIPFQ ERFTANSINQ QQSFSSEHDF LTRPVSDYLN 120 FSDHMAIMSM EAPPITSLLQ GDHVAVLHAH LNTIEGLDLG PIFENPTEVP KEQQVPVMET 180 VGASDNIAQS MSGSMMKNER GGHIYECKIC PAKFSSAQAL GGHMSYHSKA KKKGTN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG139800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2T7DM01	1e-149	A0A2T7DM01_9POAL; Uncharacterized protein
STRING	Pavir.Fa01552.1.p	1e-173	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11492	6	12

Link Out ? help Back to Top
Phytozome	Pavir.6KG139800.1.p