PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG143700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 564aa    MW: 60972.2 Da    PI: 7.1215
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG143700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.47.9e-30246302259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg+nWrKYGqK+vk+s+++rsYYrCts+gC++kkkve++  d++vvei+Y+g Hnhe
  Pavir.6KG143700.1.p 246 ADGFNWRKYGQKQVKSSDNSRSYYRCTSSGCSAKKKVEHCP-DGRVVEIIYRGAHNHE 302
                          7****************************************.***************8 PP
2WRKY100.59.8e-32413470259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  Pavir.6KG143700.1.p 413 SDGYRWRKYGQKIVKGNPNPRSYYRCTHGGCPVRKHVEKAPDDVNNIVVTYEGKHNHD 470
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.24240304IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-27242304IPR003657WRKY domain
SuperFamilySSF1182902.09E-23243304IPR003657WRKY domain
SMARTSM007744.8E-32245303IPR003657WRKY domain
PfamPF031068.2E-23247302IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-31406472IPR003657WRKY domain
SuperFamilySSF1182902.35E-27407472IPR003657WRKY domain
PROSITE profilePS5081132.948407472IPR003657WRKY domain
SMARTSM007741.2E-35412471IPR003657WRKY domain
PfamPF031061.5E-25414470IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MADGDPAKAP APDSEKPSAP AAAVEVEETR RPPPARPGSP VEEKRQSLVD ATAAEAVTRP  60
PPEDPGAPPA ENREKEAKER KEVEKGMGDE TKEKREEEDK GKEEAAAKEK AEAKGKVKVH  120
AVVKVLGTEK EVKPTRRPAG ASAETSILAV PVVAVPCFIA PSGFAGQFAM THQAALASVT  180
AQAQMHLQSP TTSTCSEAPS SPFYITPRSI VPLQQSPSTE GNVCRQLADK PFSSEPKSPH  240
LVNMVADGFN WRKYGQKQVK SSDNSRSYYR CTSSGCSAKK KVEHCPDGRV VEIIYRGAHN  300
HEPPPKTRFA KEKVTPISVP SGGETLRLVN TEILESSTPT CKSDHCAVTE TCEQQLFCSS  360
DCEGDAGNKS EDEHPSEEPM PKRRVIETTA PNLTPVLRTV REQKIIVQAG KMSDGYRWRK  420
YGQKIVKGNP NPRSYYRCTH GGCPVRKHVE KAPDDVNNIV VTYEGKHNHD EPFRSNSIPV  480
SAISPPTVTI EQPNTSTTTA DGKPPTITQK DANGESDKET TLEFGGEKAL ESAQTLLSIK  540
TNSDDMKNSV LKETSSAVPV QNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-252424721477Probable WRKY transcription factor 4
2lex_A3e-252424721477Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.183020.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG143700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820376.10.0probable WRKY transcription factor 32 isoform X1
TrEMBLA0A2S3I1Z40.0A0A2S3I1Z4_9POAL; Uncharacterized protein
STRINGSi013488m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.19e-68WRKY DNA-binding protein 4