PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG144000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 144aa MW: 16917.1 Da PI: 7.296

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG144000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34	9.5e-11	35	83	41	90
FAR1 41 reeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++++k + k+r++++ ++t+Cka++ vk+ ++w+v+ + HnH+l+ Pavir.6KG144000.1.p 35 EKKKKMDGGKKRKREKMHHTDCKARMIVKLI-GDRWHVIFFAPYHNHDLV 83 2333333678999999*************.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-8	35	83	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MKEGNSVPEY DDSDSTVRES EPEKNDEGND IENAEKKKKM DGGKKRKREK MHHTDCKARM 60 IVKLIGDRWH VIFFAPYHNH DLVVKPSLKK FMSTGHIMQL VPYEAKDVGN FRSNIRRTEK 120 FKDMQETLDY FRELEHGDAE FFH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	50	KKRKREKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG144000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311908.1	7e-41	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3L6S9Q1	4e-58	A0A3L6S9Q1_PANMI; Uncharacterized protein
STRING	Pavir.J31652.1.p	1e-103	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Link Out ? help Back to Top
Phytozome	Pavir.6KG144000.1.p