PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG164000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 344aa    MW: 36920.5 Da    PI: 6.8893
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG164000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind83.82.4e-26741642101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k++e++ed++++ ++   +  ns+vv+d++ f   +Lp+ Fkh nf+ F+RQLn+YgF+kv+ ++         weF+h  F +g++
  Pavir.6KG164000.1.p  74 FLAKTFELVEDPATDGVVARRAARNSLVVWDPHAFVAGLLPSRFKHANFSTFLRQLNTYGFRKVSPDR---------WEFTHTDFLAGQR 154
                          9********************999******************************************99.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll +i+r++
  Pavir.6KG164000.1.p 155 HLLANIRRRR 164
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-2869163IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-4370163IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.22E-2570163IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-127497IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-2374163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-12112124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-12125137IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MLPPKHRPAH QPARRSGLRQ MEHPAAVAVK QEEAEDDEAV VVLDADGDAG GRAAAAPAPE  60
PWRTPAASQQ VSPFLAKTFE LVEDPATDGV VARRAARNSL VVWDPHAFVA GLLPSRFKHA  120
NFSTFLRQLN TYGFRKVSPD RWEFTHTDFL AGQRHLLANI RRRRGAAGGS AASSGATKTG  180
ASGSGGGRES ELERLRRDRE ALARLRRGQQ EARAQLLDME RRVRGTERRQ EQCTAFLARA  240
VGSPGFLDGL LALPREAGRK RRLLDATADV LAFEELALAA GAEVEAAPVL AVAAASQGSC  300
SAATTTDMIW YELLGEEQVE IDAEVEELVA AVQQIGCLGS PSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-196616321129Heat shock factor protein 1
5d5v_B3e-196616321129Heat shock factor protein 1
5d5v_D3e-196616321129Heat shock factor protein 1
5hdg_A2e-19711637110Heat shock factor protein 1
5hdn_A2e-19711637110Heat shock factor protein 1
5hdn_B2e-19711637110Heat shock factor protein 1
5hdn_C2e-19711637110Heat shock factor protein 1
5hdn_D2e-19711637110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198RLRRDR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.200378e-66stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG164000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681569.11e-147putative heat stress transcription factor A-6a
SwissprotQ5Z6A43e-92HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLK3XXW71e-146K3XXW7_SETIT; Uncharacterized protein
STRINGSi006775m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-45heat shock transcription factor A2