PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG168300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 121aa MW: 13361.3 Da PI: 10.1048

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG168300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	25.1	3.4e-08	17	60	8	50
RWP-RK 8 edlskyFslpikdAAkeLgvclTvLKriCRqyGIkR.WPhRkik 50 +d++ +l +kdAA L+ ++ +L C q+G +R WP ki+ Pavir.6KG168300.1.p 17 SDVRDVLHLRLKDAAAALNASTIYLRYLCHQNGFPRgWPGKKIR 60 7899999***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	9.523	1	84	IPR003035	RWP-RK domain
Pfam	PF02042	9.7E-8	16	60	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MAGRRTGRPP ASRPEWSDVR DVLHLRLKDA AAALNASTIY LRYLCHQNGF PRGWPGKKIR 60 YLKAAGKTFT LADIVETKKM TDKDMISIHE PVVNNNPHPP GEELATLNLI DKVGLQSSSE 120 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG168300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008662757.1	3e-21	protein RKD4
TrEMBL	A0A3L6PM42	7e-66	A0A3L6PM42_PANMI; Protein RKD4-like
STRING	Pavir.Fa01691.1.p	2e-85	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18443	5	9

Link Out ? help Back to Top
Phytozome	Pavir.6KG168300.1.p