PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG181100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 209aa    MW: 24044 Da    PI: 6.6063
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG181100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.92.5e-11531202790
                 FAR1  27 eitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          ++ ++++  + eg++ e+ +k       k+r++++ ++t+Cka++ vk+   ++w+v+ +  +HnH+l+
  Pavir.6KG181100.1.p  53 TVRESKLENNDEGNDIENAEKkkkmdGGKKRKREKMHHTDCKARMIVKLI-GDRWHVIFFAPNHNHDLV 120
                          555666666666665444444445657789999999**************.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-954120IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDLNKSPLDF DYDFLGESDA NPLYCTHAED GEGRGRKMKE GNSIPESDDS DSTVRESKLE  60
NNDEGNDIEN AEKKKKMDGG KKRKREKMHH TDCKARMIVK LIGDRWHVIF FAPNHNHDLV  120
VKPSLKKFMR SHKGIPQAEK DFIEMLHGCN LSTGRIMQLM NEFYGSAQLV PYEAKDAGNF  180
RSNIRRTEKF KDMQETLDYF RELEHGDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18087KKRKREKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG181100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.17e-67protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A3L6S9Q11e-85A0A3L6S9Q1_PANMI; Uncharacterized protein
STRINGPavir.J32330.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7287518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-11FAR1-related sequence 5