PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG190700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 259aa    MW: 27844.2 Da    PI: 7.7619
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG190700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.51.5e-152181257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         r R+++++eq+ +Le+ F++   +p ++e +++ + l     + +++V++WFqNrR + ++
  Pavir.6KG190700.1.p 21 RARWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 81
                         89*****************99*************************************997 PP
2Wus_type_Homeobox104.66.6e-342082264
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++
  Pavir.6KG190700.1.p 20 ARARWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 82
                         689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-121688IPR009057Homeodomain-like
PROSITE profilePS5007111.371782IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-81889IPR009057Homeodomain-like
SMARTSM003893.2E-51986IPR001356Homeobox domain
PfamPF000463.0E-132181IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDSHHGQAHR SGEGGEPTTA RARWAPKPEQ ILILESIFNS GMVNPAKDET ARIRRLLERF  60
GAVRDANVFY WFQNRRSRSR RRARQLQQAA QQLPTAAVGA GHYNGASDNA SPFAMNGHGQ  120
VRAGMMMPTA APLPSSMSAA APHFFADEVD SGADDLFAIS RQMGLMSRGG DHRCGYTASD  180
DASQLSYQPT GTTSIQVFIN GAVYEVAGAG APLDLAGTFG RDVMLVHSSG EILPVNEHGV  240
LMKSLQMGEC YYLVSRST*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG190700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052491e-102AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21.
GenBankAP0149641e-102AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-102CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822574.11e-155WUSCHEL-related homeobox 10-like
SwissprotA2YST16e-94WOX10_ORYSI; WUSCHEL-related homeobox 10
TrEMBLA0A2T8IFQ61e-153A0A2T8IFQ6_9POAL; Uncharacterized protein
STRINGPavir.Fb01029.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.21e-29WUSCHEL related homeobox 12