PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG211100.4.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 122aa MW: 13157.7 Da PI: 6.9556

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG211100.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.1	1.9e-08	88	114	3	29
XXCHHHCHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeie 29 +++r +r+++NRe+A rsR+RK+ +i+ Pavir.6KG211100.4.p 88 DDRRSIRMMRNRESALRSRARKRVRIQ 114 5799******************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-6	87	114	No hit	No description
SuperFamily	SSF57959	9.64E-5	90	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MAANYHHYQM AVHAAAAAAA AWREPDSPQL SFMSGCSSLF SISTLQDDDD GAVVIAGHAL 60 PSTPISLAGF AGDEVDMEVQ QISGGSGDDR RSIRMMRNRE SALRSRARKR VRIQPDTYKF 120 T*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.19626	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG211100.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT033858	1e-95	BT033858.1 Zea mays full-length cDNA clone ZM_BFc0165B20 mRNA, complete cds.
GenBank	JX469961	1e-95	JX469961.1 Zea mays subsp. mays clone UT3223 bZIP-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812603.1	2e-71	bZIP transcription factor 46-like
TrEMBL	A0A2S3HG73	5e-70	A0A2S3HG73_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DU08	5e-70	A0A2T7DU08_9POAL; Uncharacterized protein
TrEMBL	A0A3L6PES2	5e-70	A0A3L6PES2_PANMI; Protein FD-like
STRING	Pavir.J01346.1.p	1e-75	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.6KG211100.4.p