PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG215500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 177aa    MW: 19507.8 Da    PI: 8.4991
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG215500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.93e-153797363
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                         elkr rr+++NRe+A+rsRqRK++ ++ L   v++L +  ++L+  l+  ++++a+ ++++
  Pavir.6KG215500.1.p 37 ELKRKRRMESNRESAKRSRQRKQQHLDDLNSQVDQLRTTKQQLITALNITTQNCAAAEAQN 97
                         79****************************************************9888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-133599IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.2433779IPR004827Basic-leucine zipper domain
PfamPF001704.5E-123792IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.7E-1239112No hitNo description
SuperFamilySSF579591.76E-113990No hitNo description
CDDcd147029.60E-164091No hitNo description
PROSITE patternPS0003604257IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSLSGGTFSS GTSSGSSHGT PSFGSDQADM ELQARMELKR KRRMESNRES AKRSRQRKQQ  60
HLDDLNSQVD QLRTTKQQLI TALNITTQNC AAAEAQNSVL RTQMMELESR LSALRDIICY  120
MNANQVSNAA TISVNNPSAI MSATANNHYD PFAASAWNSG MQMVQQPIDH LLYQCF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156KRSRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.10030.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG215500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822603.11e-112bZIP transcription factor 44-like isoform X1
TrEMBLA0A2T7D6F91e-111A0A2T7D6F9_9POAL; Uncharacterized protein
STRINGPavir.Fb01406.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.16e-24G-box binding factor 6