PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG219800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 287aa    MW: 30901.6 Da    PI: 8.8504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG219800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.8e-1393141254
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                          +y+GV+  ++ grW+Ae r       + r+++g+f t+eeA++a++a+ ++++
  Pavir.6KG219800.1.p  93 RYRGVY-ERQPGRWAAEFRSH---RLKVRHWVGTFATEEEAKAAYDAFERQFR 141
                          7****8.777*******5553...245*********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-1493142IPR001471AP2/ERF domain
CDDcd000183.55E-1293145No hitNo description
PROSITE profilePS5103214.57993151IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1293142IPR016177DNA-binding domain
SMARTSM003806.2E-893157IPR001471AP2/ERF domain
PfamPF008472.5E-993141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEARRIRIFF SDPDATDSDS GDDPTSGVCA PTKSAGKTEL VILQCNSRTN TRGAKMNPAG  60
AGCGRPQAIR SLALPAAGSS RNRAVGSAPT TRRYRGVYER QPGRWAAEFR SHRLKVRHWV  120
GTFATEEEAK AAYDAFERQF RSSPRPRCGT PASPPERGAN AGCVRRASHP PTDEKRQIVL  180
ALTAAATTRM LPPPSAGATM AASVSVPSAP PCIFSSMWAS SPPTLFRDER RRDDAPRSLH  240
SIWADEPADE DILGLADLAH LPLPRFSDAS VDFDPADLSL FDNGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG219800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822361.11e-145ethylene-responsive transcription factor ERF073-like
TrEMBLA0A270R5R51e-144A0A270R5R5_9POAL; Uncharacterized protein
STRINGPavir.Fa01379.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140032023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-10erf domain protein 9