PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG220800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 300aa    MW: 32117.9 Da    PI: 12.5039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG220800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.75.2e-07263292134
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslg 34 
                          s+y GVr+++ + +W+AeIrdp    ++  r +lg
  Pavir.6KG220800.1.p 263 SKYCGVRRRP-WAKWAAEIRDP----HCaLRKWLG 292
                          7999******.**********6....257777877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-6263293IPR016177DNA-binding domain
PROSITE profilePS5103212.286264299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-10264293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MPLSPSSSSI CFLLPAHDAG DTCPGRVAAP RPNPPPRPWF SPNHSSLAPR RHATRPCQLR  60
RRHDAKRRSP SPVAKLTGNF RWGRLALAQR RRAQGRHSPP AHVAGPLPRQ AHLRVPARRA  120
RRCAHLTARP VQARHARGPP PPPACRGTDE AGRRARGSRR SRGGRASRAG GEAARGWPAA  180
ARVPLPAAEV VPPAMSAPAP APAVACAGCG ADGGRVRNYA GRSELLAAVG TGSSSDNMDG  240
GECSASRVVT GGVGKRRRRM RVSKYCGVRR RPWAKWAAEI RDPHCALRKW LGSAPRLRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254270KRRRRMRVSKYCGVRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG220800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.15e-10related to AP2 6