PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG224200.18.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 251aa    MW: 27643.1 Da    PI: 8.4922
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG224200.18.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.61.2e-1390127341
                   TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                            k+C+C++skClk+YC Cfa g++C++ C+C++C+N+ +
  Pavir.6KG224200.18.p  90 IKNCKCRNSKCLKLYCGCFATGRYCKD-CNCTNCSNNGS 127
                           699************************.********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.4E-1088128IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163412.32889250IPR005172CRC domain
PfamPF036383.2E-1091125IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEALPVVKLP LPKLPVHRSL PKLQVHRPLP KLEMRKPLQQ TSLVLEQESL KQEMLVMLLT  60
SATSINMMLN SQNRWTETLS GSKDKTPASI KNCKCRNSKC LKLYCGCFAT GRYCKDCNCT  120
NCSNNGSHEN ARARQDAINA VLECRTAAFM PKAGSRSCAM QSSETLLSFP SSVDDDKGLV  180
SERNTHGHSE LGPHEVTYRA VLADIVQVED VNELCKLLIL ASRQAAEAFL AGLILSSKCY  240
MRTLSLLTSE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG224200.18.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.12e-37protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.12e-37protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755714.13e-38protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A2T7D6P33e-97A0A2T7D6P3_9POAL; Uncharacterized protein
STRINGPavir.Fa01466.1.p1e-115(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.19e-19Tesmin/TSO1-like CXC domain-containing protein