PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG240600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 261aa    MW: 28450.7 Da    PI: 9.2574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG240600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.6e-131081461455
                  AP2  14 rWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +WvA Ir p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Pavir.6KG240600.1.p 108 KWVADIRLPRK---RTRLWLGTFDTAEEAALAYDQAAYRLRG 146
                          8*******954...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM006143.6E-61870IPR003656Zinc finger, BED-type
PROSITE profilePS5080810.5091874IPR003656Zinc finger, BED-type
SuperFamilySSF576676.19E-72167No hitNo description
PfamPF028921.6E-82267IPR003656Zinc finger, BED-type
PROSITE profilePS5103217.26674154IPR001471AP2/ERF domain
CDDcd000182.06E-21101156No hitNo description
SMARTSM003802.5E-22102160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-23105155IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-16106155IPR016177DNA-binding domain
PfamPF008476.3E-8108146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAESSTQGRR KQARRKLAPR SGVWAHFTRL RDGDGNEIGK VECNRCRDQL SARHGTTSLW  60
KHFNKVCGGQ EADAAVGVGA AHSLCPKKQP DVSGPDLGEA GRYSHCVKWV ADIRLPRKRT  120
RLWLGTFDTA EEAALAYDQA AYRLRGDAAR LNFPENAASL VPLDPAAEAK LQAIFAPIAA  180
ASSSSNNARA RKKATPINLA ASPTPDNSSS VGTSGSESDD EMSSSKTWAS EMAQMNFSET  240
PWDEEESFVR RKYQFSWFSK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-131081542572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG240600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4938005e-72AF493800.1 Zea mays DRE binding factor 1 (dbf1) mRNA, complete cds.
GenBankBT0638175e-72BT063817.1 Zea mays full-length cDNA clone ZM_BFc0109P18 mRNA, complete cds.
GenBankEU9632055e-72EU963205.1 Zea mays clone 259110 DRE binding factor 1 mRNA, complete cds.
GenBankKJ7278185e-72KJ727818.1 Zea mays clone pUT5770 AP2-EREBP transcription factor (EREB204) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820073.11e-54ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A2T7D7174e-55A0A2T7D717_9POAL; Uncharacterized protein
STRINGPavir.Fa01600.1.p9e-57(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.14e-15ERF family protein