PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG271000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 371aa    MW: 41480.5 Da    PI: 6.8241
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG271000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.82.3e-45401621128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp+GfrF Ptdeel+++yL++k+ + +++   +i++vd+yk+ePwdLp     + +e yfF++r +ky +g r++rat+ gyWk+tgkdk
  Pavir.6KG271000.1.p  40 LPAGFRFFPTDEELITCYLARKAMDASFTS-PAIRDVDLYKSEPWDLPC----DLQEGYFFCTRGSKYLSGVRARRATRCGYWKSTGKDK 124
                          799************************999.78***************3....44789******************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+ ++g+lvg +ktLvfy+grap+gekt W mhey++
  Pavir.6KG271000.1.p 125 AVHGRDGRLVGRRKTLVFYRGRAPRGEKTGWAMHEYAM 162
                          ************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5135186IPR003441NAC domain
PROSITE profilePS5100551.82540186IPR003441NAC domain
PfamPF023652.2E-2441161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MPTLLVVTST YLHRQVYLAV RQSPSFTSGA ERRRMDHQLL PAGFRFFPTD EELITCYLAR  60
KAMDASFTSP AIRDVDLYKS EPWDLPCDLQ EGYFFCTRGS KYLSGVRARR ATRCGYWKST  120
GKDKAVHGRD GRLVGRRKTL VFYRGRAPRG EKTGWAMHEY AMGERSSSAL LRGAQSEWVI  180
CKVFMRKHPR GNERKVTAEE TVHDQDSTPG HLLPMVLVPD ADGFDGHEQE VAPPAAVADS  240
QHTISRSGAH VIEGNEKDHH QQHHHHQMVH ELLMIDHHGW SGAASPSLFN HDGQLGMHCS  300
TLPVMQKQSD DADYYLPELL ESDGSDDLPS NAGSGLLDTG GEVNRRAEMI TSAAIDPLHI  360
DGLYWNNFGF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-384018815170Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG271000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403872e-87BT040387.1 Zea mays full-length cDNA clone ZM_BFc0088H11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822427.11e-157NAC domain-containing protein 79-like
TrEMBLA0A1E5UJH10.0A0A1E5UJH1_9POAL; NAC domain-containing protein 100
STRINGPavir.Fa00876.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147652122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.24e-57Arabidopsis NAC domain containing protein 87