PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG289600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 493aa    MW: 54459.2 Da    PI: 7.8342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG289600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-17178227255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+G+r+++ +g+W+AeIrdp++     r++lg++ t+e+Aa a++a ++k++g
  Pavir.6KG289600.1.p 178 PYRGIRRCH-WGKWAAEIRDPKK---GVRVWLGTYKTPEDAASAYDAEARKIRG 227
                          59*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.2E-34178241IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-20178237IPR016177DNA-binding domain
PROSITE profilePS5103221.825178235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-29179237IPR001471AP2/ERF domain
PfamPF008477.0E-9179227IPR001471AP2/ERF domain
PRINTSPR003677.2E-8179190IPR001471AP2/ERF domain
CDDcd000181.05E-28179236No hitNo description
PRINTSPR003677.2E-8201217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MPQITCLLAL IAYSVVSCQI NFVGFINTCL YSFLCTKHIL QKNSRLSNQV LTMCNGWVNS  60
DLNIQAPMAR ITKNTVVEMG QERIQEKKIE NHGKCQANKV WKIDEDEKDY EADFQAFLKE  120
DEEEDKGRYK FRALMDVSRR TKEKAGSDFL MKDAMIFQKP TPTNEGPITK PKQKRKNPYR  180
GIRRCHWGKW AAEIRDPKKG VRVWLGTYKT PEDAASAYDA EARKIRGNKA KVNFPDEAPP  240
NMMSNIPKPT VPATPPILVP VEKFNANTLV HHVNNSNEDL FSVVNFSGSN ACSVPTEGFG  300
LLSMNVPYEI SRMGVCPSQN IFSACSSSNG LVDFSGNNAR SIDIEGFGLP SMRMSNAPSE  360
IPRMGHCPSQ NKFPIGASSN GSGNGTIKNL NACSSLPHLG MQMSGQRIFA GPPMMIERNI  420
GVLAPTLSNA TPIVPFDVAS VDAGTKIIDQ HPTLQVVENE SIPFNLQGDV NEDVAAEITM  480
WDFYDQLLAK AN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-19179235360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG289600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0162974e-65BT016297.1 Zea mays clone Contig130 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822438.10.0uncharacterized protein LOC112898303
TrEMBLA0A2T7D8250.0A0A2T7D825_9POAL; Uncharacterized protein
STRINGPavir.Fa00811.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168501012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.18e-28ethylene-responsive element binding protein