PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG300000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 431aa    MW: 47105.3 Da    PI: 9.7029
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG300000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57393.52.3e-29183275797
               DUF573   7 wseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                          ws eDei++L++l++++ak+g    + +d++++++++++++ +++s++ql++KirrLK+K+k  v++ak+g++p++ +eh++++++lskk
  Pavir.6KG300000.1.p 183 WSPEDEITILRALVEYRAKKGRlpASIQDTSKVHSQISGQLTANASTTQLSDKIRRLKHKYKLLVARAKNGRDPDLPTEHERDVYQLSKK 272
                          **********************777888************************************************************** PP

               DUF573  95 iWg 97 
                          +Wg
  Pavir.6KG300000.1.p 273 VWG 275
                          **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-28182275IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAPKRPAAAD APPGSGSDAS DREAGDVRYT RRRRPNAAAL SSTPTSAGAD FAAASDSDAD  60
ADAGAGGRAS PPRREDRKGP PRDRLDSDAD ADASAPPASA PTPTLTTPWR LPDPRTTSPA  120
PAPATPLRCP RASFLPHRDL QHQARQHAPD GGAPPRLRRF LQAQLQAPPQ LPGPRRSVHP  180
GSWSPEDEIT ILRALVEYRA KKGRLPASIQ DTSKVHSQIS GQLTANASTT QLSDKIRRLK  240
HKYKLLVARA KNGRDPDLPT EHERDVYQLS KKVWGFKSAG VLGGSRAYED AGDAESNEEQ  300
EIEESDEDME NGWERHESTS KKLKASRFEN GNGNAVVGRA SHGNGSRRDD AEKGKQTYPY  360
LWEAVEELSK EHPSGPIFRK AFGVLEKSKA RAMEEKLRTF RMSEIRQQLR RMDLMKETVE  420
MVLDALDGAY *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.34360.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG300000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821022.11e-179serine/arginine repetitive matrix protein 1-like
TrEMBLA0A3L6RLW10.0A0A3L6RLW1_PANMI; Serine/arginine repetitive matrix protein 1-like
STRINGPavir.J29606.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.11e-13DNA-binding storekeeper protein-related transcriptional regulator