PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG306400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 260aa    MW: 28054.7 Da    PI: 7.8861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG306400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08180220954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Pavir.6KG306400.1.p 180 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 220
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12176230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-14176232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-6180220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-6194225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDFDMLNSHP EAQLELMNAM LQLEQLTSFP DHHGAMMMVP STTPHHVAMM MVPSTPPSPP  60
CMQQQQAHHH FSSSVPHHMS AGGANGRATY HDHHQYSSAV TSHASCNGSA RSEYAAQDYP  120
AAAAAGGNGG DGATAVGSSA MREMIFRVAA LQPVNIDPEM VRPPKRRNVR ISTDPQSVAA  180
RMRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KTQVQSLERA AAASGRRPAA  240
PAVDDGGDAI YPGRISGQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166RPPKRR
2180185RMRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG306400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269731e-159KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821983.11e-137transcription factor HEC2-like
TrEMBLA0A2S3I3591e-135A0A2S3I359_9POAL; Uncharacterized protein
STRINGPavir.Fa00680.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.19e-38bHLH family protein