PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG309000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 273aa    MW: 29336.6 Da    PI: 5.2321
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG309000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-20132181255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAaka+++a+ +++g
  Pavir.6KG309000.1.p 132 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAAKAYDRAAVEFRG 181
                          8********.**********82....48***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-13132181IPR001471AP2/ERF domain
SMARTSM003803.7E-37132195IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22132190IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-31132189IPR001471AP2/ERF domain
PROSITE profilePS5103225.053132189IPR001471AP2/ERF domain
PRINTSPR003673.0E-11133144IPR001471AP2/ERF domain
CDDcd000182.97E-27135189No hitNo description
PRINTSPR003673.0E-11155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MTNGIFSAMA GDQAYMIRFD GHFDDTSPSS AGAEPPEVQV QVQQPPPFAG RVISPEQEHQ  60
VIVAALLHVV SGYTTAPPEI FPPAAAACRV CGMERCLGCE GAAAIALDGA ESNAAAAPGA  120
AGQRRRRKKK NKYRGVRQRP WGKWAAEIRD PRRAVRKWLG TFDTAEEAAK AYDRAAVEFR  180
GPRAKLNFPF PEQAAGRDEA TSNGDASAAA RSSDNTLSPS LCSGDAEERG QPAEWPRGGG  240
QETGEQLWEG LQDLMRLDEA ELWFPPTSNA WN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21129190264ATERF1
3gcc_A3e-21129190264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129RRRRKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG309000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275271e-173KJ727527.1 Zea mays clone pUT5387 AP2-EREBP transcription factor (EREB172) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973673.11e-144ethylene-responsive transcription factor ERF109
SwissprotQ9SZ068e-30EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A3L6RLI71e-147A0A3L6RLI7_PANMI; Uncharacterized protein
STRINGPavir.Fa00656.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.14e-21redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]