PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG333000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 241aa MW: 25160 Da PI: 7.3034

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG333000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.1	1.9e-38	46	103	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +s Pavir.6KG333000.1.p 46 EGDPCPRCESRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKKPSS 103 5679**************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	46	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.425	48	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.2E-32	49	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MQDSAAAAEP GRRPAQQQFA GVDLRRPKGY AAPAAAADAA AQVAAEGDPC PRCESRDTKF 60 CYYNNYNTSQ PRHFCKGCRR YWTKGGTLRN VPVGGGTRKK PSSSPPSSYA AATSSDKPRK 120 PFKKKRRVPP PHAAAATDAA PAADSAKTAT TTTPTPTTTD PASEITTELV VPAAEEEDSL 180 AHLLQPDVAL GLGISDFPAG KGLDVEPDSF EWPASFDLGA CWGSAGFADP DPAGLFLNLP 240 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	126	KKKRR
2	122	127	KKKRRV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4364	8e-99	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in all tissues examined.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG333000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822538.1	1e-114	dof zinc finger protein MNB1A-like
Swissprot	P38564	2e-81	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	A0A2T8IHF2	1e-113	A0A2T8IHF2_9POAL; Uncharacterized protein
STRING	Sb07g028850.1	5e-80	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-29	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Pavir.6KG333000.1.p

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]