PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG341300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 684aa    MW: 74110.2 Da    PI: 6.5138
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG341300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.3e-32281337259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g+H h+
  Pavir.6KG341300.1.p 281 EDGYNWRKYGQKQVKNSEHPRSYYKCTHPNCPVKKKVERSQ-EGHITEIVYKGSHSHP 337
                          8****************************************.***************7 PP
2WRKY104.55.8e-33492550159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k v++tYeg+Hnhe
  Pavir.6KG341300.1.p 492 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCSVRKHVERASNDLKSVITTYEGKHNHE 550
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-29273339IPR003657WRKY domain
PROSITE profilePS5081122.676275339IPR003657WRKY domain
SuperFamilySSF1182902.48E-26277339IPR003657WRKY domain
SMARTSM007743.5E-36280338IPR003657WRKY domain
PfamPF031065.5E-25281337IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-37477552IPR003657WRKY domain
SuperFamilySSF1182901.02E-28484552IPR003657WRKY domain
PROSITE profilePS5081137.459487552IPR003657WRKY domain
SMARTSM007742.1E-37492551IPR003657WRKY domain
PfamPF031062.0E-25493550IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MAGTDNRRAL MEDWMLPSPS PRTLMSSFLN EEFSSGPFSS IFGDNSSNKP QDGIDKSKTF  60
ADPSVEETVQ DTKAPLQLES NLFSTNQKST SHGGLAERMA ARAGFGVLKI DTSRVSSSAP  120
IRSPVTIPPG VSPRELLESP VFLPNAIAQP SPTTGKLPFL MPNNFKSMIS SVPKKAEDQS  180
QDDCAFSFQT ILRSKPPSFS TVDKGLSAFH QNQSLNDSQQ ELSLQASTTA TKDENEENLV  240
KPSTCDSMLD NDHPSPADEQ VESEQNQNGE DSSVSVITPA EDGYNWRKYG QKQVKNSEHP  300
RSYYKCTHPN CPVKKKVERS QEGHITEIVY KGSHSHPLPP PNRRPSVQSS HVNDLQADGS  360
ENFRSKPGHN TETSRGMALN DHLDVHSGGL ERNLSGSLTT TEIADTCVME SQEAVDVSST  420
VSSIEKDDRA THGTIPLTYG GDEDETESKR RKMEVSATTN TTTNAFDMAA MASRAVREPR  480
IVVQTTSEVD ILDDGYRWRK YGQKVVKGNP NPRSYYKCTY AGCSVRKHVE RASNDLKSVI  540
TTYEGKHNHE VPAARNSSGQ PNSSSGAAPQ GSNLHRRPEQ AQPSIPQLSA AGAYGSLCLP  600
PQLSATSGGF SFGMLPPGMA VPVPSLRTFM PASVPGHPPK MQGCAGLVLP RGEVKVNPDE  660
QSQLQVGNGN AMAAYQQFMG RLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36281553878Probable WRKY transcription factor 4
2lex_A3e-36281553878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.65530.0callus| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG341300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820553.10.0probable WRKY transcription factor 2
RefseqXP_025820554.10.0probable WRKY transcription factor 2
RefseqXP_025820555.10.0probable WRKY transcription factor 2
RefseqXP_025820556.10.0probable WRKY transcription factor 2
TrEMBLA0A2T7D8Y40.0A0A2T7D8Y4_9POAL; Uncharacterized protein
STRINGPavir.J35763.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-128WRKY DNA-binding protein 2