PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG350800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 163aa    MW: 18350.8 Da    PI: 5.2985
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG350800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-17243548
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +++E+ l++++++q+G++ W++Iar+++ gRt++++k++w++++
  Pavir.6KG350800.2.p  2 SPQEERLIIELHAQWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43
                         89****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001677.75E-13143No hitNo description
SMARTSM007173.9E-12145IPR001005SANT/Myb domain
PROSITE profilePS5129425.237147IPR017930Myb domain
PfamPF002492.6E-15242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-21244IPR009057Homeodomain-like
SuperFamilySSF466893.74E-13251IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSPQEERLII ELHAQWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KMSISPSSSS  60
SLTYQSCLID TSPIIGMGSG DTPNGSACVT STLESTQSSM DAYPMDQIWR EIEAPALLGT  120
AEGKEKTCSS IPCTLPSPAM WDYSCPEIFW KMEDEEIRML AL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.246400.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG350800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6524631e-124EU652463.1 Saccharum officinarum MYB protein (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankEU6702361e-124EU670236.1 Saccharum officinarum MYB transcription factor MYBAS1 (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankHM1367801e-124HM136780.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 1 (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankHM1367811e-124HM136781.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 2 (MYBAS1) mRNA, complete cds.
GenBankHM1367821e-124HM136782.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 3 (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankKM3874101e-124KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced.
GenBankKM3874111e-124KM387411.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 2 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980031.12e-97myb-related protein MYBAS1
SwissprotQ53NK61e-74MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A3L6RGN47e-99A0A3L6RGN4_PANMI; Myb-related protein MYBAS1-like
STRINGPavir.J33560.1.p1e-115(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.27e-34myb domain protein 48
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]