PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG360300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 258aa    MW: 26535.3 Da    PI: 8.9982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG360300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-105196554
                  AP2  5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         GVr  + +g ++AeIr ps+   r r+++g+f+ a +Aa a++aa+  ++
  Pavir.6KG360300.1.p 51 GVR-ERLWGGYAAEIRIPSS---RSRVWIGRFDHALQAALAYDAAMFLFY 96
                         998.777**********965...4*********************97655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.2E-1548115IPR001471AP2/ERF domain
PROSITE profilePS5103216.46348109IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1149100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-1850109IPR001471AP2/ERF domain
PfamPF008471.1E-45093IPR001471AP2/ERF domain
CDDcd000183.60E-1650111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MASSAPTSGM SSGAARKAAR RAGSGRAAAV RPPAPVPRAG GGLHRDLGWV GVRERLWGGY  60
AAEIRIPSSR SRVWIGRFDH ALQAALAYDA AMFLFYGQKL PKLRRYNFPA TPRPNVPEVV  120
RKGLTVANVK AIAEKHARSF GRFFPLPPPP VIPAAAPAAA PPQMAEAAAA AAAAAAGAGL  180
AAPLQVPPAA GEGGVAVDAT PVVGAGATAV AGDRHGDDEV YIDAEILTAA DCQFPSYPDD  240
DFIGLLDVDM DLIFNEI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG360300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822467.11e-105ethylene-responsive transcription factor ABI4-like
TrEMBLA0A2T7D9H81e-110A0A2T7D9H8_9POAL; Uncharacterized protein
STRINGPavir.Fa00470.1.p9e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.11e-10ERF family protein