PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG360400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 213aa    MW: 22605.7 Da    PI: 9.48
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG360400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.71.9e-1068116456
                  AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +GVr +  +g W++eIr+p +   r+r ++g f t  +Aa a++aa  +++ge
  Pavir.6KG360400.1.p  68 TGVRARL-WGGWAVEIRVPLS---RQRLWVGAFETDRQAALAYDAALFCFYGE 116
                          5999877.**********843...4**********99***********99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.3E-1266133IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-1266119IPR016177DNA-binding domain
PROSITE profilePS5103217.89966127IPR001471AP2/ERF domain
PRINTSPR003679.1E-56778IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-1967127IPR001471AP2/ERF domain
PfamPF008474.2E-668116IPR001471AP2/ERF domain
CDDcd000183.07E-1569129No hitNo description
PRINTSPR003679.1E-589105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSTHGAYKTE PFPLRRPVLA PSQSLYYLSP SSAVSCSLLD GEEGGAGPER WRRAAAAARQ  60
LKKRSAWTGV RARLWGGWAV EIRVPLSRQR LWVGAFETDR QAALAYDAAL FCFYGEDLPK  120
KRGFNFPAAP RPDIDEDVRA GLSVAAVKDI ANKHARGLQL GLAIAPPACT AAEPLQQAAA  180
AAGPSAGADA PAAGYHGRNP NAEVETTLRL CL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG360400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6RGQ31e-65A0A3L6RGQ3_PANMI; Uncharacterized protein
STRINGPavir.Fa00469.1.p1e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.11e-18ERF family protein