PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG375600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 448aa    MW: 48909.8 Da    PI: 9.0666
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG375600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30361417360
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          DgynWrKYGqK+vk sefprsYY+Ct+++Cp+k+kve++  d++v ei+Y+geHnh+k
  Pavir.6KG375600.1.p 361 DGYNWRKYGQKKVKVSEFPRSYYKCTHPSCPAKRKVETTI-DGQVAEIVYSGEHNHPK 417
                          9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540012.16E-3621241No hitNo description
PROSITE profilePS5060013.84228198IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1302.9E-590192No hitNo description
PfamPF029022.8E-998196IPR003653Ulp1 protease family, C-terminal catalytic domain
PROSITE profilePS5081121.987354418IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-25357418IPR003657WRKY domain
SuperFamilySSF1182903.27E-23358418IPR003657WRKY domain
SMARTSM007741.2E-31359417IPR003657WRKY domain
PfamPF031068.7E-24361416IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0019784Molecular FunctionNEDD8-specific protease activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGKGSRPAST STGGEKKGEE RVLSHGDVVL IRSDLAILRG PRFINDRIIA FYFAHLSAGL  60
GDDLLLLPPS IPYLLSNLPD PASVAAVAEP LRLASRRLVL LPVNDNPDAS VPEGGSHWTL  120
LVLDNTTSPS GPRFVHHDSI RGEPNLPIAS RLADALRPLL LQSDSRRRGA VPVVEGPTPR  180
QPNGYDCGVY VMAISRAICG WWKSGHGGHR GGDWFEAVRR EVDADSVKAM RGELLQLITT  240
LIQDKANARK MQRHEKIDAL KPVASRPFSS FRSFPKPLQD FTSTGSPPIT VLEETVLVKP  300
KATRFPSLQS ELLTKMTATI DAGSDSTCEE MKVDTEQANC CGHLTTCPTV KKPTGRRLSF  360
DGYNWRKYGQ KKVKVSEFPR SYYKCTHPSC PAKRKVETTI DGQVAEIVYS GEHNHPKPRP  420
PRTPLSSTST AEVVICGAHG TDDTMQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xt9_A8e-26222415209Sentrin-specific protease 8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG375600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683533.10.0uncharacterized protein LOC101761160
TrEMBLT1LWY31e-177T1LWY3_TRIUA; Uncharacterized protein
STRINGPavir.Fa00406.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.28e-28WRKY family protein