PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG380000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21060.9 Da    PI: 9.1402
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG380000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.63.9e-243988251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         rie+ + rqv fskRr g++ KA+ELSvLCda+v +i+fs+ g+ly ++s
  Pavir.6KG380000.1.p 39 RIEDRTSRQVRFSKRRSGLFNKAYELSVLCDARVGLIVFSPAGRLYQFAS 88
                         8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.8473090IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-313089IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-2632105IPR002100Transcription factor, MADS-box
CDDcd002653.66E-3332100No hitNo description
PRINTSPR004041.6E-263252IPR002100Transcription factor, MADS-box
PfamPF003197.5E-253986IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-265267IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-266788IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEQAEGAATA RRAELQLLQQ LEKEESKGKR KRGRVELRRI EDRTSRQVRF SKRRSGLFNK  60
AYELSVLCDA RVGLIVFSPA GRLYQFASSG SSIEEIFGRY WDLANTINGL NIEARDSTVD  120
CNTQKEQQSS VSSLPDQLNI IAQWGMEANA EEMSMTEIRN LEETVTYALA AIRNKLRMKV  180
VGLPQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-163289360Myocyte-specific enhancer factor 2B
1tqe_Q3e-163289360Myocyte-specific enhancer factor 2B
1tqe_R3e-163289360Myocyte-specific enhancer factor 2B
1tqe_S3e-163289360Myocyte-specific enhancer factor 2B
6c9l_A3e-163289360Myocyte-specific enhancer factor 2B
6c9l_B3e-163289360Myocyte-specific enhancer factor 2B
6c9l_C3e-163289360Myocyte-specific enhancer factor 2B
6c9l_D3e-163289360Myocyte-specific enhancer factor 2B
6c9l_E3e-163289360Myocyte-specific enhancer factor 2B
6c9l_F3e-163289360Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.180536e-59leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG380000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9431518e-64EU943151.1 Zea mays clone 1571160 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820080.11e-103MADS-box transcription factor 51-like isoform X1
RefseqXP_025820081.11e-103MADS-box transcription factor 51-like isoform X1
TrEMBLA0A2T7D9Y51e-113A0A2T7D9Y5_9POAL; Uncharacterized protein
STRINGSi014540m2e-80(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.11e-24AGAMOUS-like 14