PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG388300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WRKY

Protein Properties

Length: 170aa MW: 18508.7 Da PI: 11.1853

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG388300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	51.6	1.8e-16	125	162	23	59
EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 23 sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +YY+C+s gCp++k+ver+ +dp+++++tYeg+Hnh+ Pavir.6KG388300.1.p 125 GYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 162 7***988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.1E-17	124	163	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-13	124	162	IPR003657	WRKY domain
Pfam	PF03106	2.2E-13	125	161	IPR003657	WRKY domain
PROSITE profile	PS50811	16.995	125	164	IPR003657	WRKY domain
SMART	SM00774	4.2E-9	125	163	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MGEETHPPTE SKVGESHRSG AHHKNGEKRG AAGEPSRSGW SAPAGRRPDG GPAAGFLRRS 60 RPRSPTPRAE SENEKGRREK TEKERRDKRR CLVNSVPLGP TGRRVKAVAP NPGAASRVRL 120 HRGTGYYKCS SVRGCPARKH VERCVDDPSM LIVTYEGDHN HNRVLAQPA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG388300.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY940680	1e-47	AY940680.1 Zea mays WRKY1 mRNA, complete cds.
GenBank	BT083993	1e-47	BT083993.1 Zea mays full-length cDNA clone ZM_BFb0063A21 mRNA, complete cds.
GenBank	EU956173	1e-47	EU956173.1 Zea mays clone 1558475 WRKY transcription factor 21 mRNA, complete cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	2e-21	WRKY DNA-binding protein 39

Link Out ? help Back to Top
Phytozome	Pavir.6KG388300.1.p